A healthy coral (or sea anemone) is colored by the zooxanthellae (single-celled algae) that live cooperatively in it.  This type of relationship is called symbiosis.  In a healthy coral/algal symbiotic association both the algae and its coral host benefit.  The algae use photosynthesis to provide quick energy to their coral host while the coral offers protection, nutrients, and carbon dioxide to the algae.  The symbiosis persists until warmer temperatures and higher than normal ultraviolet light, both associated with global environmental change, cause the organisms to part ways.  This situation causes the coral to lose color allowing the white coral skeleton to show through the clear animal tissue (a process called bleaching).  This is not just a loss of color but also the loss of an energy source.
 


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Anemone
A solitary soft-bodied marine animal belonging to Phylum Cnidaria.

Attenuation
The overall reduction in irradiance due to absorption and scattering of light as it passes through a medium such as water.

Benthic Spectrofluorometer (BSF)
A portable diver-operated instrument that measures the reflectance and fluorescence of marine organisms.

Biological Action Spectrum
Shorter wavelengths cause more damage per unit dose than longer wavelengths, a biological action spectra weights the intensity of each wavelength by its effectiveness in causing biological damage. 

Bleaching
A phenomenon occurring when corals under stress expel their mutualistic zooxanthellae or when the concentration of photosynthetic pigments is decreased.  As a result, the corals' white skeletons show through their tissues, and they appear bleached.

Coral
A marine animal (yes it's an animal) from the same group of organisms as the sea anemone.  It is colonial and secretes a hard calcium carbonate skeleton.

Global Warming
The warming of the lower atmosphere due to the increased emission of greenhouse gases.

Greenhouse Gasses
Molecules such as water vapor, carbon dioxide, and methane which absorb, or trap, energy that is radiating from the Earth's surface. 

High Performance Liquid Chromatography (HPLC)
A technique for separating and quantifying specific pigments.

Irradiance
The amount of light energy that falls on unit area (m2) per unit time (sec).

Optical Spectra
The amount of light energy at each wavelength.  The energy may be reflected solar energy from a surface (e.g. coral) or emitted through fluorescence in response to excitation of a chemical or pigment such as chlorophyll.

Photosynthesis
The process by which plants and algae use energy from the sun to convert water and carbon dioxide to usable sugars.

Photosyntheticaly Active Radiation (PAR)
Energy from the sun consists of many wavelengths of light. Wavelengths from 400-700 nm are used in photosynthesis and together constitute photosynthetically active radiation.

Remote Sensing
The science of deriving information about the earth's land and water features from images acquired from a distance.

Spectroradiometer
An instrument which measures the amount of light at each wavelength.

Symbiosis
The close relationship of  two organisms in proximity, with one benefiting and the other either benefiting (mutualism), not being significantly affected (commensalism), or being harmed (parasitism) by the relationship.

Zooxanthellae
Photosynthetic dinoflagellate algae that live in the tissue of certain marine invertebrates, including reef building corals and sea anemones.

The following sites provide further information about coral reefs and marine conservation:

Coral Health and Monitoring Programs
Marine Conversation Biology Institute
National Science Foundation
Oceanic Research and Applications Division (ORAD)
Reefnet


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